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Mouse Profilin IIa in complex with the proline-rich domain of VASP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1D1J PDB ENTRY 1D1J
Crystallization Crystal Properties Matthews coefficient Solvent content 1.97 36.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.73 α = 90 b = 47.09 β = 90 c = 68.58 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-06-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.98 20 99.8 0.08 16.5 6.8 10355 -3 26
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.98 2.02 99.5 0.34 5 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1D1J 1.98 20 10355 518 99.8 0.146 0.145 0.181 0.2132 RANDOM 14.88
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.22 0.04 1.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.037 r_scangle_it 3.792 r_mcangle_it 2.515 r_scbond_it 2.462 r_mcbond_it 1.507 r_angle_refined_deg 1.172 r_angle_other_deg 0.785 r_symmetry_vdw_other 0.256 r_nbd_other 0.245 r_nbd_refined 0.188
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.037 r_scangle_it 3.792 r_mcangle_it 2.515 r_scbond_it 2.462 r_mcbond_it 1.507 r_angle_refined_deg 1.172 r_angle_other_deg 0.785 r_symmetry_vdw_other 0.256 r_nbd_other 0.245 r_nbd_refined 0.188 r_symmetry_hbond_refined 0.141 r_xyhbond_nbd_refined 0.133 r_nbtor_other 0.081 r_chiral_restr 0.071 r_symmetry_vdw_refined 0.05 r_bond_refined_d 0.008 r_bond_other_d 0.006 r_gen_planes_refined 0.004 r_gen_planes_other 0.001 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1123 Nucleic Acid Atoms Solvent Atoms 119 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing