☰ Navigation Tabs
SAD Structure solution of Proteinase K grown in selenate solution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 HANGING DROP AT 20C, 50 TO 200 MM NASEO4
Crystal Properties Matthews coefficient Solvent content 2 37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.053 α = 90 b = 68.053 β = 90 c = 102.553 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TOROIDAL FOCUSING MIRROR 2007-06-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X6A NSLS X6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.95 20 98.7 0.05 30.5 6.3 1875402 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.94 0.95 85.6 0.3 2 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 0.94 20 146726 7746 99.1 0.091 0.09 0.103 RANDOM 4.89
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.03 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.912 r_dihedral_angle_4_deg 14.368 r_dihedral_angle_3_deg 10.698 r_dihedral_angle_1_deg 6.322 r_scangle_it 3.77 r_scbond_it 2.812 r_mcangle_it 1.811 r_angle_refined_deg 1.592 r_mcbond_it 1.334 r_angle_other_deg 0.987
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.912 r_dihedral_angle_4_deg 14.368 r_dihedral_angle_3_deg 10.698 r_dihedral_angle_1_deg 6.322 r_scangle_it 3.77 r_scbond_it 2.812 r_mcangle_it 1.811 r_angle_refined_deg 1.592 r_mcbond_it 1.334 r_angle_other_deg 0.987 r_mcbond_other 0.398 r_symmetry_vdw_other 0.304 r_nbd_refined 0.247 r_nbd_other 0.197 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.154 r_symmetry_hbond_refined 0.138 r_symmetry_vdw_refined 0.106 r_chiral_restr 0.099 r_nbtor_other 0.092 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_metal_ion_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2032 Nucleic Acid Atoms Solvent Atoms 538 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SHELX phasing