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Crystal structure of the putative lipoprotein LppA from Mycobacterium tuberculosis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 9 20% PEG-3350, BICINE 0.1 M, PH 9, 50 MM MGCL2
Crystal Properties Matthews coefficient Solvent content 2.81 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105 α = 90 b = 49.82 β = 99.43 c = 42.21 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2006-03-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.96 45 97.8 0.11 8.6 3.9 15229
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.96 2.07 85.6 0.32 3.7 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.96 6 13939 728 97.6 0.192 0.19 0.1878 0.223 0.2254 RANDOM 23.93
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.06 -0.9 0.64 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.7 r_dihedral_angle_4_deg 20.127 r_dihedral_angle_3_deg 13.764 r_dihedral_angle_1_deg 5.494 r_scangle_it 4.448 r_scbond_it 2.982 r_angle_refined_deg 1.496 r_mcangle_it 1.491 r_mcbond_it 1.09 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.7 r_dihedral_angle_4_deg 20.127 r_dihedral_angle_3_deg 13.764 r_dihedral_angle_1_deg 5.494 r_scangle_it 4.448 r_scbond_it 2.982 r_angle_refined_deg 1.496 r_mcangle_it 1.491 r_mcbond_it 1.09 r_nbtor_refined 0.301 r_symmetry_vdw_refined 0.214 r_nbd_refined 0.205 r_xyhbond_nbd_refined 0.147 r_symmetry_hbond_refined 0.122 r_chiral_restr 0.107 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1304 Nucleic Acid Atoms Solvent Atoms 62 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SHARP phasing