☰ Navigation Tabs
Structure of P. abyssi RPS19 protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 30% - 36% PEG 2000MME TRIS-HCL 100MM PH 6.8 - 7.5
Crystal Properties Matthews coefficient Solvent content 2.5 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.7 α = 90 b = 57.43 β = 90 c = 80.2 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.15 28 91.5 0.06 22.25 7.5 49876 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.15 1.25 72.3 0.21 6.12 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT NONE 1.15 19.57 49720 2612 96 0.138 0.137 0.253 0.155 0.2443 RANDOM 15.62
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.364 r_dihedral_angle_3_deg 14.518 r_dihedral_angle_4_deg 13.451 r_dihedral_angle_1_deg 5.106 r_scangle_it 4.245 r_scbond_it 3.213 r_mcangle_it 2.54 r_mcbond_it 1.853 r_angle_refined_deg 1.818 r_angle_other_deg 0.939
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.364 r_dihedral_angle_3_deg 14.518 r_dihedral_angle_4_deg 13.451 r_dihedral_angle_1_deg 5.106 r_scangle_it 4.245 r_scbond_it 3.213 r_mcangle_it 2.54 r_mcbond_it 1.853 r_angle_refined_deg 1.818 r_angle_other_deg 0.939 r_symmetry_vdw_refined 0.356 r_symmetry_vdw_other 0.354 r_xyhbond_nbd_refined 0.279 r_nbd_refined 0.258 r_nbd_other 0.246 r_nbtor_refined 0.206 r_symmetry_hbond_refined 0.175 r_chiral_restr 0.127 r_nbtor_other 0.097 r_bond_refined_d 0.019 r_gen_planes_refined 0.012 r_bond_other_d r_gen_planes_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1128 Nucleic Acid Atoms Solvent Atoms 178 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling SHARP phasing