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The structure of the family 40 CBM from C. perfringens NanJ in complex with a sialic acid containing molecule
Crystallization Crystal Properties Matthews coefficient Solvent content 2.2 44.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.769 α = 90 b = 63.186 β = 91.02 c = 70.931 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 20 92.2 0.05 13.7 2.6 16878 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 92 0.26 3.7 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 20 16878 932 92.2 0.235 0.232 0.2351 0.309 0.3111 RANDOM 58.19
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.43 -0.25 -0.74 1.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.247 r_dihedral_angle_4_deg 18.756 r_dihedral_angle_3_deg 16.666 r_dihedral_angle_1_deg 7.182 r_scangle_it 1.476 r_angle_refined_deg 1.386 r_mcangle_it 0.931 r_scbond_it 0.915 r_mcbond_it 0.511 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.247 r_dihedral_angle_4_deg 18.756 r_dihedral_angle_3_deg 16.666 r_dihedral_angle_1_deg 7.182 r_scangle_it 1.476 r_angle_refined_deg 1.386 r_mcangle_it 0.931 r_scbond_it 0.915 r_mcbond_it 0.511 r_nbtor_refined 0.304 r_nbd_refined 0.217 r_symmetry_vdw_refined 0.206 r_xyhbond_nbd_refined 0.15 r_symmetry_hbond_refined 0.121 r_chiral_restr 0.104 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2845 Nucleic Acid Atoms Solvent Atoms 218 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling MOLREP phasing