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Structure of Progesterone 5beta-Reductase from Digitalis Lanata
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 1 MICROL OF PROTEIN SOLUTION WAS MIXED WITH 1 MICROL OF RESERVOIR SOLUTION (15 % PEG 4000, 0.1 M AMMONIUM ACETATE, 0.1 M SODIUM CITRATE, PH 5.6) AND THE DROPLET SUSPENDED OVER 700 ML OF RESERVOIR SOLUTION.
Crystal Properties Matthews coefficient Solvent content 3.4 63.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.66 α = 90 b = 78.66 β = 90 c = 180.99 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 40 99.9 0.06 33.7 18.9 23196 3 62.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.56 100 0.6 5.6 14.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 2.4 39.34 20737 2304 100 0.21 0.205 0.2766 0.251 0.294 RANDOM 47.66
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.51 5.51 -11.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.957 r_dihedral_angle_4_deg 18.55 r_dihedral_angle_3_deg 17.639 r_dihedral_angle_1_deg 7.151 r_scangle_it 2.11 r_scbond_it 1.439 r_angle_refined_deg 1.432 r_angle_other_deg 0.968 r_mcangle_it 0.955 r_mcbond_it 0.534
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.957 r_dihedral_angle_4_deg 18.55 r_dihedral_angle_3_deg 17.639 r_dihedral_angle_1_deg 7.151 r_scangle_it 2.11 r_scbond_it 1.439 r_angle_refined_deg 1.432 r_angle_other_deg 0.968 r_mcangle_it 0.955 r_mcbond_it 0.534 r_symmetry_hbond_refined 0.261 r_nbd_refined 0.209 r_nbtor_refined 0.186 r_symmetry_vdw_other 0.185 r_nbd_other 0.184 r_xyhbond_nbd_refined 0.172 r_symmetry_vdw_refined 0.108 r_nbtor_other 0.09 r_chiral_restr 0.084 r_bond_refined_d 0.014 r_bond_other_d 0.004 r_gen_planes_refined 0.004 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2787 Nucleic Acid Atoms Solvent Atoms 139 Heterogen Atoms 1
Software Software Software Name Purpose XDS data reduction XSCALE data scaling SOLVE phasing RESOLVE phasing REFMAC refinement