2V61

Structure of human MAO B in complex with the selective inhibitor 7-(3- chlorobenzyloxy)-4-(methylamino)methyl-coumarin


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1OJAPDB ENTRY 1OJA

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.5250.74

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 131.998α = 90
b = 222.539β = 90
c = 86.202γ = 90
Symmetry
Space GroupC 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-1ESRFID14-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.73099.60.073.4138335

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1OJA1.7113.23134828350599.50.1730.1720.201RANDOM14.68
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.52-0.28-0.24
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.631
r_dihedral_angle_4_deg16.426
r_dihedral_angle_3_deg12.945
r_dihedral_angle_1_deg5.608
r_scangle_it3.134
r_scbond_it2.026
r_angle_refined_deg1.289
r_mcangle_it1.153
r_mcbond_it0.751
r_symmetry_hbond_refined0.342
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.631
r_dihedral_angle_4_deg16.426
r_dihedral_angle_3_deg12.945
r_dihedral_angle_1_deg5.608
r_scangle_it3.134
r_scbond_it2.026
r_angle_refined_deg1.289
r_mcangle_it1.153
r_mcbond_it0.751
r_symmetry_hbond_refined0.342
r_nbtor_refined0.307
r_symmetry_vdw_refined0.269
r_nbd_refined0.21
r_xyhbond_nbd_refined0.114
r_chiral_restr0.086
r_bond_refined_d0.011
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7911
Nucleic Acid Atoms
Solvent Atoms921
Heterogen Atoms152

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling