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W57E Flavodoxin from Anabaena
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FLV PDB ENTRY 1FLV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 28 % PEG 4000, 0.1M TRIS/HCL PH 8.5, 0.2M MGCL2
Crystal Properties Matthews coefficient Solvent content 1.96 37.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.848 α = 90 b = 55.576 β = 91.17 c = 70.253 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH MIRRORS 2007-05-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.88 25.99 96.8 0.05 9.5 3.6 23136 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.88 1.98 96.8 0.19 3.6 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1FLV 1.88 25.48 21549 1583 100 0.184 0.181 0.1848 0.224 0.2305 RANDOM 29.73
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.849 r_dihedral_angle_4_deg 21.392 r_dihedral_angle_3_deg 13.877 r_dihedral_angle_1_deg 5.727 r_scangle_it 3.828 r_scbond_it 2.741 r_mcangle_it 1.753 r_angle_refined_deg 1.597 r_mcbond_it 1.491 r_angle_other_deg 0.982
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.849 r_dihedral_angle_4_deg 21.392 r_dihedral_angle_3_deg 13.877 r_dihedral_angle_1_deg 5.727 r_scangle_it 3.828 r_scbond_it 2.741 r_mcangle_it 1.753 r_angle_refined_deg 1.597 r_mcbond_it 1.491 r_angle_other_deg 0.982 r_symmetry_vdw_other 0.392 r_xyhbond_nbd_refined 0.274 r_symmetry_vdw_refined 0.243 r_symmetry_hbond_refined 0.237 r_nbd_refined 0.23 r_nbd_other 0.21 r_nbtor_refined 0.186 r_chiral_restr 0.093 r_nbtor_other 0.09 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2647 Nucleic Acid Atoms Solvent Atoms 236 Heterogen Atoms 63
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing