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Structural basis for Dscam isoform specificity
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2V5M PDB ENTRY 2V5M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 1.5 M AMMONIUM SULPHATE 0.1 M HEPES PH 7.5
Crystal Properties Matthews coefficient Solvent content 3 59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.77 α = 90 b = 166.842 β = 90 c = 125.61 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2005-02-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 20 96.2 0.11 13.3 2.8 22250
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.35 93.7 0.85 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2V5M 2.3 19.99 42443 2254 95.6 0.23 0.227 0.2355 0.287 0.292 RANDOM 54.17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.42 0.3 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.831 r_dihedral_angle_3_deg 19.691 r_dihedral_angle_4_deg 19.384 r_dihedral_angle_1_deg 13.24 r_scangle_it 4.026 r_scbond_it 2.696 r_angle_refined_deg 2.492 r_mcangle_it 1.582 r_angle_other_deg 1.403 r_mcbond_it 1.217
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.831 r_dihedral_angle_3_deg 19.691 r_dihedral_angle_4_deg 19.384 r_dihedral_angle_1_deg 13.24 r_scangle_it 4.026 r_scbond_it 2.696 r_angle_refined_deg 2.492 r_mcangle_it 1.582 r_angle_other_deg 1.403 r_mcbond_it 1.217 r_symmetry_hbond_refined 0.336 r_symmetry_vdw_refined 0.29 r_symmetry_vdw_other 0.271 r_nbd_refined 0.263 r_nbd_other 0.235 r_xyhbond_nbd_refined 0.231 r_nbtor_refined 0.191 r_chiral_restr 0.144 r_nbtor_other 0.102 r_bond_refined_d 0.009 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6077 Nucleic Acid Atoms Solvent Atoms 246 Heterogen Atoms 112
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing