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STRUCTURE OF HUMAN IGF2R DOMAINS 11-12
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 0.2 M POTASSIUM SODIUM TARTRATE, 20% (W/V) PEG 3350, pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.5 51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.793 α = 90 b = 64.793 β = 90 c = 269.569 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MIRRORS 2004-09-24 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 45 99.5 0.09 25.5 19.6 6123 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.3 96.6 0.74 4.9 19.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 3.2 19.73 5495 590 99.7 0.259 0.253 0.247 0.317 0.3085 RANDOM 97.56
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.3 2.15 4.3 -6.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.037 r_dihedral_angle_4_deg 19.327 r_dihedral_angle_3_deg 19.264 r_dihedral_angle_1_deg 6.207 r_angle_refined_deg 1.132 r_nbtor_refined 0.308 r_symmetry_hbond_refined 0.247 r_nbd_refined 0.202 r_symmetry_vdw_refined 0.194 r_xyhbond_nbd_refined 0.142
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.037 r_dihedral_angle_4_deg 19.327 r_dihedral_angle_3_deg 19.264 r_dihedral_angle_1_deg 6.207 r_angle_refined_deg 1.132 r_nbtor_refined 0.308 r_symmetry_hbond_refined 0.247 r_nbd_refined 0.202 r_symmetry_vdw_refined 0.194 r_xyhbond_nbd_refined 0.142 r_chiral_restr 0.072 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2017 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling HKL2Map phasing