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Family 84 glycoside hydrolase from Clostridium perfringens, 2.1 Angstrom structure
Crystallization Crystal Properties Matthews coefficient Solvent content 2.59 52.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 130.385 α = 90 b = 150.046 β = 90 c = 155.428 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113.15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 105.41 99.9 0.1 16.14 85752 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 2.1 105.41 84080 4440 99.7 0.198 0.195 0.1948 0.255 0.2513 RANDOM 31.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.19 -0.06 -1.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.427 r_dihedral_angle_3_deg 16.963 r_dihedral_angle_4_deg 14.921 r_dihedral_angle_1_deg 7.187 r_scangle_it 2.51 r_scbond_it 1.526 r_angle_refined_deg 1.389 r_mcangle_it 0.979 r_mcbond_it 0.514 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.427 r_dihedral_angle_3_deg 16.963 r_dihedral_angle_4_deg 14.921 r_dihedral_angle_1_deg 7.187 r_scangle_it 2.51 r_scbond_it 1.526 r_angle_refined_deg 1.389 r_mcangle_it 0.979 r_mcbond_it 0.514 r_nbtor_refined 0.3 r_symmetry_vdw_refined 0.218 r_nbd_refined 0.204 r_symmetry_hbond_refined 0.193 r_xyhbond_nbd_refined 0.16 r_chiral_restr 0.122 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9238 Nucleic Acid Atoms Solvent Atoms 1191 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement