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Crystal Structure of Jaagsiekte Sheep Retrovirus Capsid N-terminal domain
Crystallization Crystal Properties Matthews coefficient Solvent content 2.07 41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.595 α = 90 b = 57.826 β = 109.17 c = 40.927 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.1 SRS PX14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 20 98.8 0.08 16.9 5 20920
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 90.2 0.4 2.9 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.5 14.79 19678 1067 99.2 0.152 0.15 0.1613 0.185 0.1926 RANDOM 7.96
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.49 0.98 -0.64 -0.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.542 r_dihedral_angle_4_deg 17.31 r_dihedral_angle_3_deg 13.156 r_dihedral_angle_1_deg 4.626 r_scangle_it 2.837 r_scbond_it 2.015 r_angle_refined_deg 1.177 r_mcangle_it 0.993 r_angle_other_deg 0.871 r_mcbond_it 0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.542 r_dihedral_angle_4_deg 17.31 r_dihedral_angle_3_deg 13.156 r_dihedral_angle_1_deg 4.626 r_scangle_it 2.837 r_scbond_it 2.015 r_angle_refined_deg 1.177 r_mcangle_it 0.993 r_angle_other_deg 0.871 r_mcbond_it 0.79 r_symmetry_vdw_other 0.234 r_nbd_refined 0.228 r_nbtor_refined 0.193 r_nbd_other 0.182 r_symmetry_vdw_refined 0.18 r_xyhbond_nbd_refined 0.132 r_symmetry_hbond_refined 0.119 r_nbtor_other 0.085 r_chiral_restr 0.069 r_bond_refined_d 0.009 r_bond_other_d 0.005 r_gen_planes_refined 0.005 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1043 Nucleic Acid Atoms Solvent Atoms 201 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing