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NEMO CC2-LZ domain - 1D5 DARPin complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2JAB PDB ENTRY 2JAB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 5% MPD, 5% ETHANOL, 100 MM HEPES, PH 7.5
Crystal Properties Matthews coefficient Solvent content 3.92 68.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.02 α = 90 b = 63.02 β = 90 c = 436.917 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2007-11-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 50 84.8 0.13 11.6 4.9 86037
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3.06 42.9 0.45 1.8 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2JAB 2.9 47.67 17155 883 86.48 0.21051 0.20754 0.2063 0.26821 0.2654 RANDOM 52.694
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.66 -1.66 3.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.431 r_dihedral_angle_3_deg 23.565 r_dihedral_angle_4_deg 19.766 r_dihedral_angle_1_deg 6.139 r_scangle_it 3.062 r_scbond_it 1.742 r_angle_refined_deg 1.586 r_mcangle_it 1.111 r_mcbond_it 0.562 r_chiral_restr 0.103
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.431 r_dihedral_angle_3_deg 23.565 r_dihedral_angle_4_deg 19.766 r_dihedral_angle_1_deg 6.139 r_scangle_it 3.062 r_scbond_it 1.742 r_angle_refined_deg 1.586 r_mcangle_it 1.111 r_mcbond_it 0.562 r_chiral_restr 0.103 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3491 Nucleic Acid Atoms Solvent Atoms 51 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling AMoRE phasing