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A non-cytotoxic DsRed variant for whole-cell labeling
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2VAE PDB ENTRY 2VAE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 298 100 MM BIS-TRIS, PH 5.5 200 MM AMMONIUM SULFATE, 16% PEG8000, VAPOR DIFFUSION, SITTING DROP, 298K
Crystal Properties Matthews coefficient Solvent content 2.84 58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 115.526 α = 90 b = 122.619 β = 90 c = 164.851 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2007-06-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 98 0.14 14.3 6.6 92897
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.49 84.8 0.61 2.2 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2VAE 2.4 50 86263 4521 98.6 0.223 0.22 0.223 0.271 0.2752 RANDOM 35.34
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.34 1.37 -2.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.013 r_dihedral_angle_4_deg 16.604 r_dihedral_angle_3_deg 15.603 r_dihedral_angle_1_deg 9.111 r_scangle_it 2.254 r_angle_refined_deg 1.434 r_scbond_it 1.391 r_mcangle_it 0.992 r_angle_other_deg 0.873 r_mcbond_it 0.532
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.013 r_dihedral_angle_4_deg 16.604 r_dihedral_angle_3_deg 15.603 r_dihedral_angle_1_deg 9.111 r_scangle_it 2.254 r_angle_refined_deg 1.434 r_scbond_it 1.391 r_mcangle_it 0.992 r_angle_other_deg 0.873 r_mcbond_it 0.532 r_chiral_restr 0.088 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14214 Nucleic Acid Atoms Solvent Atoms 491 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing