☰ Navigation Tabs
Crystal structure of the SeMet-labeled prolyl-4 hydroxylase (P4H) type I from green algae Chlamydomonas reinhardtii.
Crystallization Crystal Properties Matthews coefficient Solvent content 1.8 31.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 137.49 α = 90 b = 137.49 β = 90 c = 88.13 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-10-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 0.9421, 0.9421, 0.9798 EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.93 25 99.1 0.06 11.8 3.8 457239 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.93 2.05 98.1 0.34 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 1.93 19.87 60331 3176 99.6 0.192 0.188 0.1907 0.223 0.2239 RANDOM 26.74
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 0.26 -0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.912 r_dihedral_angle_4_deg 22.548 r_dihedral_angle_3_deg 14.122 r_dihedral_angle_1_deg 6.222 r_scangle_it 3.013 r_scbond_it 2.211 r_angle_refined_deg 1.526 r_mcangle_it 1.24 r_mcbond_it 0.875 r_nbtor_refined 0.296
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.912 r_dihedral_angle_4_deg 22.548 r_dihedral_angle_3_deg 14.122 r_dihedral_angle_1_deg 6.222 r_scangle_it 3.013 r_scbond_it 2.211 r_angle_refined_deg 1.526 r_mcangle_it 1.24 r_mcbond_it 0.875 r_nbtor_refined 0.296 r_symmetry_vdw_refined 0.204 r_symmetry_hbond_refined 0.201 r_nbd_refined 0.195 r_xyhbond_nbd_refined 0.157 r_chiral_restr 0.105 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5773 Nucleic Acid Atoms Solvent Atoms 313 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling SOLVE phasing