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Serendipitous discovery and X-ray structure of a human phosphate binding apolipoprotein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 50MM CACODYLATE BUFFER PH 6, AMMONIUM SULFATE 2M AND SODIUM CHLORIDE 1MM
Crystal Properties Matthews coefficient Solvent content 1.88 49.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.245 α = 90 b = 86.843 β = 90 c = 89.889 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.934, 0.7228, 0.718758 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 48 99.4 0.09 13.78 7 30194 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.89 2.01 91.8 0.23 7.31
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT NONE 1.89 44.95 28698 1495 99.6 0.13 0.127 0.1266 0.186 0.185 RANDOM 14.87
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.869 r_dihedral_angle_4_deg 15.675 r_dihedral_angle_3_deg 12.162 r_dihedral_angle_1_deg 6.574 r_scangle_it 3.946 r_scbond_it 2.84 r_angle_refined_deg 2.142 r_mcangle_it 1.732 r_mcbond_it 1.26 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.869 r_dihedral_angle_4_deg 15.675 r_dihedral_angle_3_deg 12.162 r_dihedral_angle_1_deg 6.574 r_scangle_it 3.946 r_scbond_it 2.84 r_angle_refined_deg 2.142 r_mcangle_it 1.732 r_mcbond_it 1.26 r_nbtor_refined 0.312 r_symmetry_hbond_refined 0.244 r_nbd_refined 0.227 r_xyhbond_nbd_refined 0.205 r_chiral_restr 0.186 r_bond_refined_d 0.029 r_gen_planes_refined 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2721 Nucleic Acid Atoms Solvent Atoms 694 Heterogen Atoms 77
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling SHARP phasing