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Structure of the Gar1 domain of NAf1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 2M AMMONIUM SULPHATE, 0.2M K/NA TARTRATE, NA CITRATE PH5.6., pH 5.60
Crystal Properties Matthews coefficient Solvent content 2.6 33.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.534 α = 90 b = 103.534 β = 90 c = 109.031 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.74 20 99.4 0.09 18.9 8.9 18030 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.74 2.89 99.7 0.59 3.3 9.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.74 19.57 17085 914 99.3 0.259 0.257 0.287 RANDOM 30.59
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.89 0.45 0.89 -1.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.557 r_dihedral_angle_3_deg 24.172 r_dihedral_angle_4_deg 20.847 r_dihedral_angle_1_deg 6.975 r_scangle_it 3.044 r_angle_refined_deg 2.634 r_scbond_it 1.844 r_mcangle_it 1.277 r_mcbond_it 0.767 r_symmetry_vdw_refined 0.423
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.557 r_dihedral_angle_3_deg 24.172 r_dihedral_angle_4_deg 20.847 r_dihedral_angle_1_deg 6.975 r_scangle_it 3.044 r_angle_refined_deg 2.634 r_scbond_it 1.844 r_mcangle_it 1.277 r_mcbond_it 0.767 r_symmetry_vdw_refined 0.423 r_nbtor_refined 0.345 r_symmetry_hbond_refined 0.292 r_nbd_refined 0.262 r_xyhbond_nbd_refined 0.195 r_chiral_restr 0.144 r_bond_refined_d 0.034 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4541 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 35
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHARP phasing SHELXD phasing REFMAC refinement