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The yeast ribosome synthesis factor Emg1 alpha beta knot fold methyltransferase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 25% PEG4K, 0.2M LI2SO4, 0.1M TRIS PH7.5, 20% GLYCEROL
Crystal Properties Matthews coefficient Solvent content 2.62 52.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.479 α = 90 b = 76.614 β = 90 c = 87.561 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 19 93.2 0.04 18.2 3.4 20207 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.94 2.05 61.1 0.14 4 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 2 19.01 18466 990 97.7 0.219 0.217 0.271 RANDOM 18.76
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.069 r_dihedral_angle_3_deg 12.511 r_dihedral_angle_4_deg 11.923 r_dihedral_angle_1_deg 5.159 r_scangle_it 1.552 r_scbond_it 1.041 r_angle_refined_deg 0.935 r_mcangle_it 0.705 r_mcbond_it 0.457 r_nbtor_refined 0.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.069 r_dihedral_angle_3_deg 12.511 r_dihedral_angle_4_deg 11.923 r_dihedral_angle_1_deg 5.159 r_scangle_it 1.552 r_scbond_it 1.041 r_angle_refined_deg 0.935 r_mcangle_it 0.705 r_mcbond_it 0.457 r_nbtor_refined 0.295 r_nbd_refined 0.169 r_symmetry_vdw_refined 0.099 r_xyhbond_nbd_refined 0.083 r_symmetry_hbond_refined 0.071 r_chiral_restr 0.056 r_bond_refined_d 0.007 r_gen_planes_refined 0.002 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1706 Nucleic Acid Atoms Solvent Atoms 225 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SHELXD phasing