☰ Navigation Tabs
Myosin VI (MD) pre-powerstroke state (Mg.ADP.VO4)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BKH PDB ENTRY 2BKH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 3-4% PEG 8000, 50MM MES PH 6.75, 100MM SAM, 1MM TCEP
Crystal Properties Matthews coefficient Solvent content 2.37 42.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.512 α = 90 b = 93.845 β = 90 c = 100.976 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2007-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 70 100 0.11 4 8 90108 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.84 100 0.41 1.9 8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BKH 1.75 68.68 81037 9071 99.9 0.205 0.202 0.227 RANDOM 18.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.2 0.77 -0.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.161 r_dihedral_angle_4_deg 14.632 r_dihedral_angle_3_deg 12.493 r_dihedral_angle_1_deg 5.036 r_scangle_it 2.113 r_scbond_it 1.355 r_angle_refined_deg 1.062 r_mcangle_it 0.832 r_mcbond_it 0.517 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.161 r_dihedral_angle_4_deg 14.632 r_dihedral_angle_3_deg 12.493 r_dihedral_angle_1_deg 5.036 r_scangle_it 2.113 r_scbond_it 1.355 r_angle_refined_deg 1.062 r_mcangle_it 0.832 r_mcbond_it 0.517 r_nbtor_refined 0.299 r_nbd_refined 0.186 r_symmetry_vdw_refined 0.145 r_xyhbond_nbd_refined 0.097 r_chiral_restr 0.074 r_symmetry_hbond_refined 0.068 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6023 Nucleic Acid Atoms Solvent Atoms 536 Heterogen Atoms 71
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing