☰ Navigation Tabs
Crystal structure of the T. thermophilus dodecin in complex with prebound FMN
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MOG PDB ENTRY 1MOG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.2 M MAGNESIUM ACETATE, 0.1 M SODIUM CACODYLATE, PH 6.5, 30% MPD
Crystal Properties Matthews coefficient Solvent content 2.37 48.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.765 α = 90 b = 65.765 β = 90 c = 202.408 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH OSMIC MIRRORS 2002-12-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 19.9 99.8 0.07 23.3 7.1 18248
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.46 0.36 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1MOG 2.4 19.87 17102 1076 99.9 0.227 0.225 0.2305 0.262 0.2136 RANDOM 62.42
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.03 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.428 r_dihedral_angle_3_deg 14.194 r_dihedral_angle_4_deg 13.833 r_dihedral_angle_1_deg 5.316 r_scangle_it 1.862 r_scbond_it 1.078 r_angle_refined_deg 0.955 r_angle_other_deg 0.752 r_mcangle_it 0.747 r_mcbond_it 0.376
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.428 r_dihedral_angle_3_deg 14.194 r_dihedral_angle_4_deg 13.833 r_dihedral_angle_1_deg 5.316 r_scangle_it 1.862 r_scbond_it 1.078 r_angle_refined_deg 0.955 r_angle_other_deg 0.752 r_mcangle_it 0.747 r_mcbond_it 0.376 r_symmetry_vdw_other 0.197 r_nbd_other 0.179 r_nbd_refined 0.176 r_nbtor_refined 0.176 r_symmetry_vdw_refined 0.162 r_symmetry_hbond_refined 0.159 r_xyhbond_nbd_refined 0.095 r_nbtor_other 0.079 r_chiral_restr 0.057 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3181 Nucleic Acid Atoms Solvent Atoms 13 Heterogen Atoms 95
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing