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CRYSTAL STRUCTURE OF RAT TOM20-ALDH PRESEQUENCE COMPLEX
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OM2 PDB ENTRY 1OM2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 PEG6000, AMMONIUM CHROLIDE, HEPES, PH 7.0, VAPOR DIFFUSION
Crystal Properties Matthews coefficient Solvent content 3 59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 151.781 α = 90 b = 64.146 β = 94.7 c = 68.018 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2004-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL40B2 SPring-8 BL40B2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 20 93 0.05 13.67 4.51 34455
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.15 64.1 0.4 2.47 1.96
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OM2 2.05 20 34455 3635 93.1 0.254 0.248 0.2506 0.308 0.3122 RANDOM 41.89
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.1 2.49 1.83 0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.284 r_dihedral_angle_3_deg 18.03 r_dihedral_angle_4_deg 17.206 r_dihedral_angle_1_deg 5.392 r_scangle_it 2.142 r_scbond_it 1.494 r_angle_refined_deg 1.226 r_mcangle_it 0.934 r_angle_other_deg 0.923 r_mcbond_it 0.844
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.284 r_dihedral_angle_3_deg 18.03 r_dihedral_angle_4_deg 17.206 r_dihedral_angle_1_deg 5.392 r_scangle_it 2.142 r_scbond_it 1.494 r_angle_refined_deg 1.226 r_mcangle_it 0.934 r_angle_other_deg 0.923 r_mcbond_it 0.844 r_symmetry_hbond_refined 0.234 r_nbd_refined 0.212 r_xyhbond_nbd_refined 0.203 r_nbd_other 0.179 r_nbtor_refined 0.171 r_symmetry_vdw_other 0.17 r_symmetry_vdw_refined 0.103 r_nbtor_other 0.096 r_chiral_restr 0.069 r_bond_refined_d 0.01 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3855 Nucleic Acid Atoms Solvent Atoms 377 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing