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Crystal structure of N-terminal domain of acyl-CoA thioesterase 7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.2 M SODIUM POTASSIUM TARTRATE, 15% PEG 2000 MONO METHYL ETHER
Crystal Properties Matthews coefficient Solvent content 2.6 52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.741 α = 90 b = 125.531 β = 95.39 c = 81.78 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 IMAGE PLATE RIGAKU R-AXIS IV M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.78 29.28 95.5 0.05 13.8 5.87 101344 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.78 1.85 76.3 0.36 3.7 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.78 29.29 96252 5091 95.5 0.212 0.21 0.2072 0.244 0.2402 RANDOM 19.78
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.661 r_dihedral_angle_4_deg 19.876 r_dihedral_angle_3_deg 13.439 r_dihedral_angle_1_deg 5.531 r_scangle_it 2.253 r_scbond_it 1.487 r_angle_refined_deg 1.167 r_mcangle_it 0.859 r_mcbond_it 0.605 r_nbtor_refined 0.287
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.661 r_dihedral_angle_4_deg 19.876 r_dihedral_angle_3_deg 13.439 r_dihedral_angle_1_deg 5.531 r_scangle_it 2.253 r_scbond_it 1.487 r_angle_refined_deg 1.167 r_mcangle_it 0.859 r_mcbond_it 0.605 r_nbtor_refined 0.287 r_symmetry_vdw_refined 0.214 r_nbd_refined 0.191 r_symmetry_hbond_refined 0.143 r_xyhbond_nbd_refined 0.118 r_chiral_restr 0.074 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6968 Nucleic Acid Atoms Solvent Atoms 730 Heterogen Atoms 288
Software Software Software Name Purpose REFMAC refinement CrystalClear data reduction PHASER phasing