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Kinesin 16B Phox-homology domain (KIF16B)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.8 25% PEG 3350, 0.1 M TRIS PH 8.8, 0.2 M NH4OAC
Crystal Properties Matthews coefficient Solvent content 2.32 46.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.894 α = 90 b = 100.894 β = 90 c = 100.894 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD BENT MIRROR 2006-09-03 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.979 , 0.9393 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 71.43 100 0.1 29.84 27.54 8819 -4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.23 99.9 0.46 2.17 5.15
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 2.2 71.43 8819 420 99.9 0.212 0.209 0.2013 0.287 0.272 RANDOM 39.99
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.9 r_dihedral_angle_4_deg 21.992 r_dihedral_angle_3_deg 18.533 r_dihedral_angle_1_deg 5.794 r_scangle_it 3.304 r_scbond_it 2.145 r_mcangle_it 1.8 r_angle_refined_deg 1.379 r_mcbond_it 1.076 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.9 r_dihedral_angle_4_deg 21.992 r_dihedral_angle_3_deg 18.533 r_dihedral_angle_1_deg 5.794 r_scangle_it 3.304 r_scbond_it 2.145 r_mcangle_it 1.8 r_angle_refined_deg 1.379 r_mcbond_it 1.076 r_nbtor_refined 0.31 r_nbd_refined 0.203 r_symmetry_hbond_refined 0.137 r_xyhbond_nbd_refined 0.133 r_symmetry_vdw_refined 0.133 r_chiral_restr 0.102 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1118 Nucleic Acid Atoms Solvent Atoms 62 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction TRUNCATE data scaling SHARP phasing