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Crystal structure of human CDK2 complexed with a thiazolidinone inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 VAPOR DIFFUSION HANGING DROP, ROOM TEMPERATURE, PEG3350, HEPES PH7.2, AMMONIUM ACETATE, pH 7.00
Crystal Properties Matthews coefficient Solvent content 2.1 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.459 α = 90 b = 71.85 β = 90 c = 72.011 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 IMAGE PLATE RIGAKU MSC MIRRORS 2003-06-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 98.1 0.08 7.8 2.3 18985 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 2.2 8 13340 701 98.4 0.197 0.193 0.1895 0.286 0.2802 RANDOM 24.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.23 -0.68 0.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.368 r_dihedral_angle_4_deg 21.501 r_dihedral_angle_3_deg 17.774 r_dihedral_angle_1_deg 7.128 r_scangle_it 3.359 r_scbond_it 2.303 r_angle_refined_deg 1.774 r_mcangle_it 1.558 r_mcbond_it 0.945 r_nbtor_refined 0.311
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.368 r_dihedral_angle_4_deg 21.501 r_dihedral_angle_3_deg 17.774 r_dihedral_angle_1_deg 7.128 r_scangle_it 3.359 r_scbond_it 2.303 r_angle_refined_deg 1.774 r_mcangle_it 1.558 r_mcbond_it 0.945 r_nbtor_refined 0.311 r_nbd_refined 0.233 r_symmetry_hbond_refined 0.2 r_xyhbond_nbd_refined 0.197 r_symmetry_vdw_refined 0.192 r_chiral_restr 0.109 r_bond_refined_d 0.018 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2345 Nucleic Acid Atoms Solvent Atoms 219 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling