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Crystal structure of human CDK2 complexed with a thiazolidinone inhibitor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7 277 VAPOUR DIFFUSION AT 4 DEG C, 0.1 M HEPES PH 7.0, 1M LITHIUM SULPHATE
Crystal Properties Matthews coefficient Solvent content 3.1 61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 212.626 α = 90 b = 73.436 β = 129.54 c = 153.028 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2003-07-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 30 87.5 0.09 8.6 2.4 70622
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 2.4 20 60675 3234 89.5 0.198 0.196 0.1913 0.243 0.2359 RANDOM 28.96
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.33 -0.23 -1.44 0.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.857 r_dihedral_angle_4_deg 20.723 r_dihedral_angle_3_deg 18.379 r_dihedral_angle_1_deg 6.625 r_scangle_it 3.777 r_scbond_it 2.449 r_angle_refined_deg 1.733 r_mcangle_it 1.697 r_mcbond_it 0.965 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.857 r_dihedral_angle_4_deg 20.723 r_dihedral_angle_3_deg 18.379 r_dihedral_angle_1_deg 6.625 r_scangle_it 3.777 r_scbond_it 2.449 r_angle_refined_deg 1.733 r_mcangle_it 1.697 r_mcbond_it 0.965 r_nbtor_refined 0.306 r_symmetry_hbond_refined 0.231 r_symmetry_vdw_refined 0.224 r_nbd_refined 0.218 r_xyhbond_nbd_refined 0.176 r_chiral_restr 0.123 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8916 Nucleic Acid Atoms Solvent Atoms 296 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling