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High resolution structure of human CD59
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2J8C PDB ENTRY 2J8C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 25% PEG8000, 0.03M POTASSIUM PHOSPHATE
Crystal Properties Matthews coefficient Solvent content 2.13 42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.84 α = 90 b = 60.84 β = 90 c = 107.53 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD ADSC QUANTUM 315 2006-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 40 100 0.09 29 14.3 20934 0.65
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 100 0.32 7 14.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2J8C 1.8 20 20772 20772 1038 0.187 0.187 0.185 0.1836 0.223 0.2256 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation t_dihedral_angle_d 12.7 t_it 1.256 t_angle_deg 0.827 t_nbd 0.193 t_gen_planes 0.025 t_trig_c_planes 0.01 t_bond_d 0.004 t_incorr_chiral_ct t_pseud_angle t_omega_torsion
RMS Deviations Key Refinement Restraint Deviation t_dihedral_angle_d 12.7 t_it 1.256 t_angle_deg 0.827 t_nbd 0.193 t_gen_planes 0.025 t_trig_c_planes 0.01 t_bond_d 0.004 t_incorr_chiral_ct t_pseud_angle t_omega_torsion t_other_torsion t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1887 Nucleic Acid Atoms Solvent Atoms 212 Heterogen Atoms
Software Software Software Name Purpose TNT refinement MOSFLM data reduction SCALA data scaling PHASER phasing