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Crystal structure of econazole-bound CYP130 from Mycobacterium tuberculosis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2UUQ PDB ENTRY 2UUQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.25 1.4 M AMMONIUM SULFATE, 0.1 M MES, PH 6.25, 40 MM NAF
Crystal Properties Matthews coefficient Solvent content 5.65 78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 130.676 α = 90 b = 130.676 β = 90 c = 229.357 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC CCD MIRRORS 2007-01-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 50 100 0.08 29.9 9.8 45935
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.11 100 0.51 4.2 9.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2UUQ 3 49.67 41548 4204 90.3 0.2 0.2 0.2021 0.234 0.2346 RANDOM 64.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 9.56 9.56 -19.13
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 21 c_scangle_it 2.71 c_mcangle_it 2.08 c_scbond_it 1.68 c_angle_deg 1.3 c_mcbond_it 1.18 c_improper_angle_d 1.02 c_bond_d 0.008 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 21 c_scangle_it 2.71 c_mcangle_it 2.08 c_scbond_it 1.68 c_angle_deg 1.3 c_mcbond_it 1.18 c_improper_angle_d 1.02 c_bond_d 0.008 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6119 Nucleic Acid Atoms Solvent Atoms 77 Heterogen Atoms 168
Software Software Software Name Purpose CNS refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing