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Structure of Yersinia enterocolitica Family 28 Exopolygalacturonase
Crystallization Crystal Properties Matthews coefficient Solvent content 2.57 51.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.952 α = 90 b = 78.763 β = 103.61 c = 98.192 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS NSLS
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.19 20 99.4 0.1 11.9 7.3 64794 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.19 34.42 64794 3457 99.5 0.187 0.185 0.2459 0.228 0.2466 RANDOM 24.93
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.13 -0.01 -0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.675 r_dihedral_angle_4_deg 17.672 r_dihedral_angle_3_deg 15.752 r_dihedral_angle_1_deg 9.736 r_scangle_it 4.395 r_scbond_it 2.826 r_angle_refined_deg 1.824 r_mcangle_it 1.694 r_mcbond_it 1.072 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.675 r_dihedral_angle_4_deg 17.672 r_dihedral_angle_3_deg 15.752 r_dihedral_angle_1_deg 9.736 r_scangle_it 4.395 r_scbond_it 2.826 r_angle_refined_deg 1.824 r_mcangle_it 1.694 r_mcbond_it 1.072 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.295 r_symmetry_hbond_refined 0.234 r_nbd_refined 0.215 r_xyhbond_nbd_refined 0.177 r_chiral_restr 0.139 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8811 Nucleic Acid Atoms Solvent Atoms 463 Heterogen Atoms 108
Software Software Software Name Purpose REFMAC refinement