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Hexagonal crystal form of GamS from bacteriophage lambda.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2UUZ PDB ENTRY 2UUZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 100 MM MES, PH 6.5, 20-25 % PEG 400, 0.1 M NACL
Crystal Properties Matthews coefficient Solvent content 2.93 41.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.479 α = 90 b = 84.479 β = 90 c = 105.26 γ = 120
Symmetry Space Group P 6 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 73 99.5 0.09 6 15.3 6851 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.74 99.5 0.27 2.4 16.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2UUZ 2.6 105.41 6911 339 99.1 0.239 0.235 0.3 0.299 RANDOM 35.47
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.63 -0.31 -0.63 0.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.611 r_dihedral_angle_3_deg 19.636 r_dihedral_angle_4_deg 17.184 r_dihedral_angle_1_deg 5.411 r_scangle_it 2.437 r_scbond_it 1.52 r_angle_refined_deg 1.256 r_mcangle_it 1.083 r_mcbond_it 0.621 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.611 r_dihedral_angle_3_deg 19.636 r_dihedral_angle_4_deg 17.184 r_dihedral_angle_1_deg 5.411 r_scangle_it 2.437 r_scbond_it 1.52 r_angle_refined_deg 1.256 r_mcangle_it 1.083 r_mcbond_it 0.621 r_nbtor_refined 0.299 r_nbd_refined 0.229 r_symmetry_vdw_refined 0.17 r_symmetry_hbond_refined 0.17 r_xyhbond_nbd_refined 0.151 r_chiral_restr 0.105 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1292 Nucleic Acid Atoms Solvent Atoms 31 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing