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Crystal structure of CYP130 from Mycobacterium tuberculosis in the ligand-free form
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.2 1.6 M AMMONIUM SULFATE, 0.1 M SODIUM CITRATE, PH=5.2, 2 % ISOPROPANOL
Crystal Properties Matthews coefficient Solvent content 2.08 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 160.005 α = 90 b = 53.854 β = 96.49 c = 43.726 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC CCD MIRRORS 2007-07-02 M MAD 2 1 x-ray 110 CCD ADSC CCD M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID APS 19-ID 2 SYNCHROTRON ALS BEAMLINE 8.3.1 0.97970, 0.96863 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.46 50 95.6 0.032 46.4 3.7 64293
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.46 1.51 81.9 0.17 6.5 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 1.46 79.56 55263 6225 96.4 0.199 0.196 0.2146 0.227 RANDOM 22.62
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.33 -1.26 -0.61 0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.462 r_dihedral_angle_4_deg 15.177 r_dihedral_angle_3_deg 13.099 r_dihedral_angle_1_deg 4.852 r_scangle_it 2.996 r_scbond_it 2.93 r_mcangle_it 1.414 r_angle_refined_deg 1.257 r_mcbond_it 0.963 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.462 r_dihedral_angle_4_deg 15.177 r_dihedral_angle_3_deg 13.099 r_dihedral_angle_1_deg 4.852 r_scangle_it 2.996 r_scbond_it 2.93 r_mcangle_it 1.414 r_angle_refined_deg 1.257 r_mcbond_it 0.963 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.263 r_nbd_refined 0.204 r_symmetry_hbond_refined 0.175 r_xyhbond_nbd_refined 0.113 r_chiral_restr 0.081 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3029 Nucleic Acid Atoms Solvent Atoms 293 Heterogen Atoms 59
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling CNS phasing