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CHEY FROM THERMOTOGA MARITIMA (APO-II)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TMY PDB ENTRY 1TMY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 0.2M AMMONIUM SULFATE, 0.1M ACETATE BUFFER (PH 4.6), 30% PEG 4000, 15MM MGCL2
Crystal Properties Matthews coefficient Solvent content 3 63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.657 α = 90 b = 98.657 β = 90 c = 32.254 γ = 90
Symmetry Space Group P 4 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 295 AREA DETECTOR XUONG-HAMLIN MULTIWIRE COLLIMATOR 1995-12-15 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 20 89 0.068 7.8 2.9 6660
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.6 76 0.184 2.5 1.7
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION SIRAS / MOLECULAR REPLACEMENT PDB ENTRY 1TMY 2.3 20 6660 6660 89 0.181 0.1754
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation t_dihedral_angle_d 19.8 t_it 9.88 t_angle_deg 2.19 t_nbd 0.02 t_gen_planes 0.018 t_trig_c_planes 0.015 t_bond_d 0.013 t_incorr_chiral_ct t_pseud_angle
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 900 Nucleic Acid Atoms Solvent Atoms 19 Heterogen Atoms
Software Software Software Name Purpose RSS model building TNT refinement SDMS data reduction SDMS data scaling RSS phasing