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SOYBEAN AGGLUTININ COMPLEXED WITH 2,6-PENTASACCHARIDE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2LTN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.2 0.1 M HEPES, PH 7.2; 1 MM CACL2; 1 MM MNCL2 0.5 M NACL
Crystal Properties Matthews coefficient Solvent content 5.9 79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.9 α = 90 b = 144.9 β = 90 c = 109.4 γ = 120
Symmetry Space Group P 64 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 287 AREA DETECTOR SIEMENS COLLIMATOR M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 90 81 0.126 0.126 3.6 17287 2 18.3
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 2LTN 2.6 90 17012 80 0.208
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation t_dihedral_angle_d 20.37 t_it 5.66 t_angle_deg 2.217 t_nbd 0.069 t_gen_planes 0.023 t_bond_d 0.016 t_trig_c_planes 0.007 t_incorr_chiral_ct t_pseud_angle
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1688 Nucleic Acid Atoms Solvent Atoms 24 Heterogen Atoms 27
Software Software Software Name Purpose X-PLOR model building TNT refinement X-GEN data reduction X-GEN data scaling X-PLOR phasing