2RTX
Solution structure of the GGQ domain of YaeJ protein from Escherichia coli
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 1mM [U-13C; U-15N]GGQ domain-1, 20mM [U-2H]TRIS-2, 100mM NaCl-3, 1mM [U-2H]DTT-4, 0.02% NaN3-5, 10% [U-2H]H2O-6 | 90% H2O/10% D2O | 120 | 7.0 | ambient atm | 298 | |
2 | 3D 1H-13C NOESY | 1mM [U-13C; U-15N]GGQ domain-1, 20mM [U-2H]TRIS-2, 100mM NaCl-3, 1mM [U-2H]DTT-4, 0.02% NaN3-5, 10% [U-2H]H2O-6 | 90% H2O/10% D2O | 120 | 7.0 | ambient atm | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 700 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
restrained energy minimization | CYANA |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | 3.93 | Guntert et al. |
2 | collection | XwinNMR | Bruker Biospin | |
3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
4 | refinement | OPALp | 1.4 | Koradi, Guntert, Billeter |
5 | data analysis | KUJIRA | Kobayashi, N. | |
6 | data analysis | NMRView | Johnson, One Moon Scientific |