☰ Navigation Tabs
Solution Structure of the bombyx mori lysozyme
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-13C NOESY 20 mM sodium acetate-1, 100 mM sodium chloride-2, 0.02 % sodium azide-3 90% H2O/10% D2O 120 3.8 ambient 298 2 3D 1H-15N NOESY 20 mM sodium acetate-1, 100 mM sodium chloride-2, 0.02 % sodium azide-3 90% H2O/10% D2O 120 3.8 ambient 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 800
NMR Refinement Method Details Software torsion angle dynamics, DGSA-distance geometry simulated annealing Amber
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm 2 collection TopSpin Bruker Biospin 3 structure solution CYANA Guntert, Mumenthaler and Wuthrich 4 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 5 data analysis NMRView Johnson, One Moon Scientific 6 data analysis KUJIRA Kobayashi, N. 7 refinement CYANA Guntert, Mumenthaler and Wuthrich 8 refinement Amber Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm