☰ Navigation Tabs
Solution structure of the E. coli ORF135 protein
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 1mM [U-99% 15N] entity-1; 50mM potassium phosphate-2; 20mM potassium chloride-3; 1mM DTT-4; 0.1mM EDTA-5; 93% H2O/7% D2O 93% H2O/7% D2O 70 6.9 ambient 303 2 3D HNCACB 1mM [U-99% 13C; U-99% 15N] entity-6; 50mM potassium phosphate-7; 20mM potassium chloride-8; 1mM DTT-9; 0.1mM EDTA-10; 93% H2O/7% D2O 93% H2O/7% D2O 70 6.9 ambient 303 3 3D HN(COCA)CB 1mM [U-99% 13C; U-99% 15N] entity-6; 50mM potassium phosphate-7; 20mM potassium chloride-8; 1mM DTT-9; 0.1mM EDTA-10; 93% H2O/7% D2O 93% H2O/7% D2O 70 6.9 ambient 303 4 3D HN(CA)CO 1mM [U-99% 13C; U-99% 15N] entity-6; 50mM potassium phosphate-7; 20mM potassium chloride-8; 1mM DTT-9; 0.1mM EDTA-10; 93% H2O/7% D2O 93% H2O/7% D2O 70 6.9 ambient 303 5 3D HNCO 1mM [U-99% 13C; U-99% 15N] entity-6; 50mM potassium phosphate-7; 20mM potassium chloride-8; 1mM DTT-9; 0.1mM EDTA-10; 93% H2O/7% D2O 93% H2O/7% D2O 70 6.9 ambient 303 6 3D HCCH-TOCSY 1mM [U-99% 13C; U-99% 15N] entity-11; 50mM potassium phosphate-12; 20mM potassium chloride-13; 1mM DTT-14; 0.1mM EDTA-15; 100% D2O 100% D2O 70 6.9 ambient 303 7 3D H(CCO)NH 1mM [U-99% 13C; U-99% 15N] entity-6; 50mM potassium phosphate-7; 20mM potassium chloride-8; 1mM DTT-9; 0.1mM EDTA-10; 93% H2O/7% D2O 93% H2O/7% D2O 70 6.9 ambient 303 8 3D C(CO)NH 1mM [U-99% 13C; U-99% 15N] entity-6; 50mM potassium phosphate-7; 20mM potassium chloride-8; 1mM DTT-9; 0.1mM EDTA-10; 93% H2O/7% D2O 93% H2O/7% D2O 70 6.9 ambient 303 9 4D HC(CO)NH 1mM [U-99% 13C; U-99% 15N] entity-6; 50mM potassium phosphate-7; 20mM potassium chloride-8; 1mM DTT-9; 0.1mM EDTA-10; 93% H2O/7% D2O 93% H2O/7% D2O 70 6.9 ambient 303 10 3D 1H-13C NOESY aliphatic 1mM [U-99% 13C; U-99% 15N] entity-11; 50mM potassium phosphate-12; 20mM potassium chloride-13; 1mM DTT-14; 0.1mM EDTA-15; 100% D2O 100% D2O 70 6.9 ambient 303 11 3D 1H-15N NOESY 1mM [U-99% 15N] entity-1; 50mM potassium phosphate-2; 20mM potassium chloride-3; 1mM DTT-4; 0.1mM EDTA-5; 93% H2O/7% D2O 93% H2O/7% D2O 70 6.9 ambient 303 12 2D 15N filtered NOESY 1mM [U-99% 15N] entity-1; 50mM potassium phosphate-2; 20mM potassium chloride-3; 1mM DTT-4; 0.1mM EDTA-5; 93% H2O/7% D2O 93% H2O/7% D2O 70 6.9 ambient 303 13 3D HNHA 1mM [U-99% 15N] entity-1; 50mM potassium phosphate-2; 20mM potassium chloride-3; 1mM DTT-4; 0.1mM EDTA-5; 93% H2O/7% D2O 93% H2O/7% D2O 70 6.9 ambient 303
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 500 2 Bruker AVANCE 600 3 Bruker DRX 800
NMR Refinement Method Details Software simulated annealing XwinNMR
NMR Ensemble Information Conformer Selection Criteria structures with favorable non-bond energy Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection XwinNMR Bruker Biospin 2 collection TopSpin Bruker Biospin 3 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 data analysis TALOS Cornilescu, Delaglio and Bax 5 peak picking Sparky Goddard 6 data analysis Sparky Goddard 7 chemical shift assignment Sparky Goddard 8 structure solution CYANA Guntert, Mumenthaler and Wuthrich 9 refinement CNS Brunger, Adams, Clore, Gros, Nilges and Read