2RRE
Structure and function of the N-terminal nucleolin binding domain of nuclear valocine containing protein like 2 (NVL2) harboring a nucleolar localization signal
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 1.2mM [U-99% 15N] NVL2 N-terminal domain; 95% H2O/5% D2O | 95% H2O/5% D2O | 25 | 6.4 | ambient | 298 | |
2 | 2D 1H-13C HSQC | 0.6mM [U-99% 13C; U-99% 15N] NVL2 N-terminal domain; 100% D2O | 100% D2O | 25 | 6.4 | ambient | 298 | |
3 | 3D HNCACB | 0.6mM [U-99% 13C; U-99% 15N] NVL2 N-terminal domain; 100% D2O | 100% D2O | 25 | 6.4 | ambient | 298 | |
4 | 3D H(CCO)NH | 0.6mM [U-99% 13C; U-99% 15N] NVL2 N-terminal domain; 100% D2O | 100% D2O | 25 | 6.4 | ambient | 298 | |
5 | 3D 1H-15N NOESY | 1.2mM [U-99% 15N] NVL2 N-terminal domain; 95% H2O/5% D2O | 95% H2O/5% D2O | 25 | 6.4 | ambient | 298 | |
6 | 3D 1H-13C NOESY | 0.6mM [U-99% 13C; U-99% 15N] NVL2 N-terminal domain; 100% D2O | 100% D2O | 25 | 6.4 | ambient | 298 | |
7 | 3D HNCO | 0.6mM [U-99% 13C; U-99% 15N] NVL2 N-terminal domain; 100% D2O | 100% D2O | 25 | 6.4 | ambient | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 500 |
2 | Bruker | DMX | 800 |
3 | GE | AVANCE | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | CYANA |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 200 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | CYANA | 2.0.17 | Guntert, Mumenthaler and Wuthrich |
2 | refinement | CYANA | 2.0.17 | Guntert, Mumenthaler and Wuthrich |
3 | refinement | CNS | 1.2 | |
4 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
5 | peak picking | Sparky | Goddard | |
6 | chemical shift assignment | Sparky | Goddard |