2RPC
Solution structure of the tandem zf-C2H2 domains from the human zinc finger protein ZIC 3
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D 1H-15N NOESY | 0.57mM [U-13C; U-15N] zinc finger protein ZIC 3; 20mM [U-2H] TRIS; 100mM sodium chloride; 1mM [U-2H] DTT; 0.02 % sodium azide; 0.05mM ZnCl2; 1mM IDA; 10% [U-2H] D2O; 90% H2O/10% D2O | 90% H2O/10% D2O | 120 | 7.0 | ambient | 298 | |
2 | 3D 1H-13C NOESY | 0.57mM [U-13C; U-15N] zinc finger protein ZIC 3; 20mM [U-2H] TRIS; 100mM sodium chloride; 1mM [U-2H] DTT; 0.02 % sodium azide; 0.05mM ZnCl2; 1mM IDA; 10% [U-2H] D2O; 90% H2O/10% D2O | 90% H2O/10% D2O | 120 | 7.0 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 900 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
torsion angle dynamics | TopSpin |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (fewest violations) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | collection | TopSpin | Bruker Biospin | |
2 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
3 | data analysis | NMRView | Johnson, One Moon Scientific | |
4 | data analysis | KUJIRA | Kobayashi, N | |
5 | structure solution | CYANA | Guntert, Mumenthaler and Wuthrich | |
6 | refinement | CYANA | Guntert, Mumenthaler and Wuthrich |