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Structural Basis of PxxDY motif recognition in SH3 binding
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.8mM [U-98% 13C; U-98% 15N] Eps8L1SH3; 2.4mM CD3e peptide; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 AMBIENT 298 2 2D 1H-13C HSQC 0.8mM [U-98% 13C; U-98% 15N] Eps8L1SH3; 2.4mM CD3e peptide; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 AMBIENT 298 3 3D HNCA 0.8mM [U-98% 13C; U-98% 15N] Eps8L1SH3; 2.4mM CD3e peptide; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 AMBIENT 298 4 3D HN(CO)CA 0.8mM [U-98% 13C; U-98% 15N] Eps8L1SH3; 2.4mM CD3e peptide; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 AMBIENT 298 5 3D HNCACB 0.8mM [U-98% 13C; U-98% 15N] Eps8L1SH3; 2.4mM CD3e peptide; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 AMBIENT 298 6 3D CBCA(CO)NH 0.8mM [U-98% 13C; U-98% 15N] Eps8L1SH3; 2.4mM CD3e peptide; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 AMBIENT 298 7 3D iHNCACB 0.8mM [U-98% 13C; U-98% 15N] Eps8L1SH3; 2.4mM CD3e peptide; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 AMBIENT 298 8 3D iHNCA 0.8mM [U-98% 13C; U-98% 15N] Eps8L1SH3; 2.4mM CD3e peptide; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 AMBIENT 298 9 3D HCCH-COSY 0.8mM [U-98% 13C; U-98% 15N] Eps8L1SH3; 2.4mM CD3e peptide; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 AMBIENT 298 10 3D CC(CO)NH 0.8mM [U-98% 13C; U-98% 15N] Eps8L1SH3; 2.4mM CD3e peptide; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 AMBIENT 298 11 3D H(CCO)NH 0.8mM [U-98% 13C; U-98% 15N] Eps8L1SH3; 2.4mM CD3e peptide; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 AMBIENT 298 12 2D (HB)CB(CGCD)HD 0.8mM [U-98% 13C; U-98% 15N] Eps8L1SH3; 2.4mM CD3e peptide; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 AMBIENT 298 13 2D (HB)CB(CGCDCE)HE 0.8mM [U-98% 13C; U-98% 15N] Eps8L1SH3; 2.4mM CD3e peptide; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 AMBIENT 298 14 3D 1H-15N NOESY 0.8mM [U-98% 13C; U-98% 15N] Eps8L1SH3; 2.4mM CD3e peptide; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 AMBIENT 298 15 3D 1H-13C NOESY 0.8mM [U-98% 13C; U-98% 15N] Eps8L1SH3; 2.4mM CD3e peptide; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 AMBIENT 298 16 3D 1H-15N NOESY filteded/edited 0.8mM [U-98% 13C; U-98% 15N] Eps8L1SH3; 2.4mM CD3e peptide; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 AMBIENT 298 17 3D 1H-13C NOESY filtered/edited 0.8mM [U-98% 13C; U-98% 15N] Eps8L1SH3; 2.4mM CD3e peptide; 90% H2O/10% D2O 90% H2O/10% D2O 7.5 AMBIENT 298
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Varian INOVA 800 2 Varian INOVA 600
NMR Refinement Method Details Software torsion angle dynamics CYANA
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 structure solution CYANA 2.0 Guntert, Mumenthaler and Wuthrich 2 refinement Amber 8.0 Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, and Kollm 3 chemical shift assignment Sparky Goddard 4 peak picking Sparky Goddard 5 data analysis Sparky Goddard 6 collection VNMR Varian 7 processing VNMR Varian