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Solution Structure of the N-terminal SAP Domain of SUMO E3 Ligases from Oryza sativa
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC 0.7 mM [U-13C; U-15N] Siz1, 20 mM potassium phosphate, 300 mM sodium chloride, 2 mM DTT 92% H2O/8% D2O 6.1 ambient 283 2 3D 1H-15N NOESY 0.7 mM [U-13C; U-15N] Siz1, 20 mM potassium phosphate, 300 mM sodium chloride, 2 mM DTT 92% H2O/8% D2O 6.1 ambient 283 3 3D HNCO 0.7 mM [U-13C; U-15N] Siz1, 20 mM potassium phosphate, 300 mM sodium chloride, 2 mM DTT 92% H2O/8% D2O 6.1 ambient 283 4 3D HNCA 0.7 mM [U-13C; U-15N] Siz1, 20 mM potassium phosphate, 300 mM sodium chloride, 2 mM DTT 92% H2O/8% D2O 6.1 ambient 283 5 3D CBCA(CO)NH 0.7 mM [U-13C; U-15N] Siz1, 20 mM potassium phosphate, 300 mM sodium chloride, 2 mM DTT 92% H2O/8% D2O 6.1 ambient 283 6 3D 13C-edited 1H-15N NOESY 0.7 mM [U-13C; U-15N] Siz1, 20 mM potassium phosphate, 300 mM sodium chloride, 2 mM DTT 92% H2O/8% D2O 6.1 ambient 283 7 2D 1H-13C HSQC 0.7 mM [U-13C; U-15N] Siz1, 20 mM potassium phosphate, 300 mM sodium chloride, 2 mM DTT 100% D2O 6.1 ambient 283 8 3D HCCH-TOCSY 0.7 mM [U-13C; U-15N] Siz1, 20 mM potassium phosphate, 300 mM sodium chloride, 2 mM DTT 100% D2O 6.1 ambient 283 9 4D 1H-13C NOESY 0.7 mM [U-13C; U-15N] Siz1, 20 mM potassium phosphate, 300 mM sodium chloride, 2 mM DTT 100% D2O 6.1 ambient 283 10 3D HCABGCO 0.7 mM [U-13C; U-15N] Siz1, 20 mM potassium phosphate, 300 mM sodium chloride, 2 mM DTT 100% D2O 6.1 ambient 283
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DMX 750
NMR Refinement Method Details Software torsion angle dynamics XwinNMR
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (fewest violations)
Computation: NMR Software # Classification Version Software Name Author 1 collection XwinNMR 3.1 Bruker Biospin 2 processing NMRPipe released at Feb 10, 2006 Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 data analysis TALOS 2003.027.13.05 Cornilescu, Delaglio and Bax 4 peak picking Sparky 3.113 Goddard 5 chemical shift assignment Sparky 3.113 Goddard 6 peak picking PIPP 4.3.6 Garrett 7 chemical shift assignment PIPP 4.3.6 Garrett 8 structure solution CYANA 2.1 Guntert, Mumenthaler and Wuthrich 9 refinement CYANA 2.1 Guntert, Mumenthaler, Wuthrich 10 data analysis AQUA 3.2 Rullmann, Doreleijers and Kaptein 11 data analysis ProcheckNMR 3.5.4 Laskowski and MacArthur