2RLJ
NMR Structure of Ebola fusion peptide in SDS micelles at pH 7
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-1H TOCSY | 400mM SDS, 10% D2O, 15mM potassium phosphate, 90% H2O, 10% D2O | 90% H2O/10% D2O | 0.015 | 7 | ambient | 298 | |
2 | 2D 1H-1H NOESY | 400mM SDS, 10% D2O, 15mM potassium phosphate, 90% H2O, 10% D2O | 90% H2O/10% D2O | 0.015 | 7 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AMX | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | NMRDraw |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRDraw | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
2 | chemical shift assignment | NMRView | Johnson, One Moon Scientific | |
3 | peak picking | NMRView | Johnson, One Moon Scientific | |
4 | structure solution | CNSSOLVE | Brunger, Adams, Clore, Gros, Nilges and Read | |
5 | data analysis | ProcheckNMR | Laskowski and MacArthur | |
6 | refinement | CNSSOLVE | Brunger, Adams, Clore, Gros, Nilges and Read |