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Crystal Structure of the Conjugated Bile Acid Hydrolase from Clostridium perfringens in Complex with Reaction Products Glycine and Cholate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 291 10 mM BisTris pH 5.5, 20 mM ammonium sulfate, 25% PEG 3350, 10 mM Na-Glycocholate, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.33 47.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.24 α = 90 b = 64.24 β = 90 c = 169.9 γ = 90
Symmetry Space Group P 42 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm MIRRORS 2007-07-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.91841 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20 99.8 0.064 18.34 62897 -3 23.237
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.9 100 0.31 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 20 33907 1722 99.91 0.195 0.193 0.1919 0.227 0.2255 RANDOM 18.994
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.17 0.17 -0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.49 r_dihedral_angle_3_deg 12.06 r_dihedral_angle_4_deg 9.575 r_dihedral_angle_1_deg 5.317 r_scangle_it 1.132 r_angle_refined_deg 1.009 r_scbond_it 0.79 r_mcangle_it 0.742 r_mcbond_it 0.466 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.49 r_dihedral_angle_3_deg 12.06 r_dihedral_angle_4_deg 9.575 r_dihedral_angle_1_deg 5.317 r_scangle_it 1.132 r_angle_refined_deg 1.009 r_scbond_it 0.79 r_mcangle_it 0.742 r_mcbond_it 0.466 r_nbtor_refined 0.301 r_nbd_refined 0.173 r_symmetry_vdw_refined 0.142 r_symmetry_hbond_refined 0.096 r_xyhbond_nbd_refined 0.078 r_chiral_restr 0.068 r_bond_refined_d 0.006 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2626 Nucleic Acid Atoms Solvent Atoms 380 Heterogen Atoms 44
Software Software Software Name Purpose XSCALE data scaling SHARP phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection XDS data reduction