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Crystal structure of the OXA-10 W154H mutant at pH 7
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1K4F PDB entry 1K4F
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 1.6M AS, 0.1M HEPES, PEG 30%, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.68 54.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.68 α = 90 b = 97.06 β = 90 c = 125.68 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-09-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM30A 0.978872 ESRF BM30A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 48.68 99.4 0.123 10.9 5.3 47547 30.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 96.2 0.762 1.7 3.5 6568
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1K4F 1.9 48.68 45064 2400 99.3 0.17109 0.16863 0.1685 0.21815 0.2208 RANDOM 18.86
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.82 0.33 -1.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.834 r_dihedral_angle_4_deg 18.124 r_dihedral_angle_3_deg 14.977 r_dihedral_angle_1_deg 5.681 r_scangle_it 4.294 r_mcangle_it 3.371 r_scbond_it 3.044 r_mcbond_it 2.513 r_angle_refined_deg 1.497 r_nbtor_refined 0.302
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.834 r_dihedral_angle_4_deg 18.124 r_dihedral_angle_3_deg 14.977 r_dihedral_angle_1_deg 5.681 r_scangle_it 4.294 r_mcangle_it 3.371 r_scbond_it 3.044 r_mcbond_it 2.513 r_angle_refined_deg 1.497 r_nbtor_refined 0.302 r_symmetry_hbond_refined 0.274 r_nbd_refined 0.208 r_symmetry_vdw_refined 0.18 r_xyhbond_nbd_refined 0.153 r_chiral_restr 0.109 r_bond_refined_d 0.015 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3899 Nucleic Acid Atoms Solvent Atoms 353 Heterogen Atoms 71
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling AMoRE phasing