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Crystal Structure of apo F. graminearum TRI101
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ZBA PDB entry 2ZBA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.9 277 2.1M sodium malonate, 100 mM 3-N-morpholino propanesulfonic acid, pH 6.9, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.65 53.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 114.209 α = 90 b = 114.209 β = 90 c = 80.384 γ = 90
Symmetry Space Group P 4 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD 2006-08-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97907 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 50 99.6 0.083 17.2 10.6 36684 22.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.99 2.09 97.2 0.53 1.92 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2ZBA 1.99 50 35009 1838 99.62 0.19852 0.19609 0.197 0.2436 0.2445 RANDOM 22.143
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.58 -0.58 1.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.55 r_dihedral_angle_4_deg 19.492 r_dihedral_angle_3_deg 14.462 r_dihedral_angle_1_deg 8.161 r_scangle_it 3.058 r_scbond_it 2.205 r_angle_refined_deg 1.656 r_mcangle_it 1.403 r_mcbond_it 0.914 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.55 r_dihedral_angle_4_deg 19.492 r_dihedral_angle_3_deg 14.462 r_dihedral_angle_1_deg 8.161 r_scangle_it 3.058 r_scbond_it 2.205 r_angle_refined_deg 1.656 r_mcangle_it 1.403 r_mcbond_it 0.914 r_nbtor_refined 0.305 r_symmetry_vdw_refined 0.234 r_nbd_refined 0.208 r_xyhbond_nbd_refined 0.152 r_symmetry_hbond_refined 0.151 r_chiral_restr 0.12 r_bond_refined_d 0.02 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3299 Nucleic Acid Atoms Solvent Atoms 347 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data collection HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing