2RJN

Crystal structure of an uncharacterized protein Q2BKU2 from Neptuniibacter caesariensis


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2944 M Sodium formate, 0.01M Spermine tetrachloride, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties
Matthews coefficientSolvent content
2.6954.32

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 79.474α = 90
b = 52.973β = 124.96
c = 55.124γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315X292007-10-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X29A0.97900NSLSX29A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
125079.90.05914.63.519935
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0742.40.1882.61061

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.119.2396284811000.1870.1850.236RANDOM39.612
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.33-0.93-0.52-0.21
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.755
r_dihedral_angle_3_deg19.235
r_dihedral_angle_4_deg14.405
r_scbond_it9.877
r_dihedral_angle_1_deg6.982
r_scangle_it5.684
r_mcangle_it4.835
r_angle_refined_deg1.867
r_mcbond_it1.702
r_nbtor_refined0.313
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.755
r_dihedral_angle_3_deg19.235
r_dihedral_angle_4_deg14.405
r_scbond_it9.877
r_dihedral_angle_1_deg6.982
r_scangle_it5.684
r_mcangle_it4.835
r_angle_refined_deg1.867
r_mcbond_it1.702
r_nbtor_refined0.313
r_symmetry_vdw_refined0.245
r_symmetry_hbond_refined0.233
r_nbd_refined0.226
r_xyhbond_nbd_refined0.222
r_chiral_restr0.13
r_bond_refined_d0.02
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1078
Nucleic Acid Atoms
Solvent Atoms64
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SHELXphasing
REFMACrefinement
PDB_EXTRACTdata extraction
CBASSdata collection
SHELXDphasing