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B-specific alpha-1,3-galactosyltransferase G176R S235G mutant (AABB) + H-antigen disaccharide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 7.5 298 PEG4000 Glycerol MgCl NH2SO4, pH 7.5, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.27 45.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.52 α = 90 b = 149.06 β = 90 c = 79.61 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 IMAGE PLATE RIGAKU RAXIS IV++ 2007-05-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.41 20 96.2 0.037 21.1 4.18 58216
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.41 1.46 84.6 0.315 3.4 2.94 5063
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.41 20 58214 2963 96.16 0.216 0.215 0.237 0.2298 RANDOM 16.384
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.29 -0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.89 r_dihedral_angle_4_deg 16.801 r_dihedral_angle_3_deg 12.917 r_dihedral_angle_1_deg 6.15 r_scangle_it 2.542 r_scbond_it 1.672 r_angle_refined_deg 1.232 r_mcangle_it 1.154 r_mcbond_it 0.712 r_nbtor_refined 0.316
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.89 r_dihedral_angle_4_deg 16.801 r_dihedral_angle_3_deg 12.917 r_dihedral_angle_1_deg 6.15 r_scangle_it 2.542 r_scbond_it 1.672 r_angle_refined_deg 1.232 r_mcangle_it 1.154 r_mcbond_it 0.712 r_nbtor_refined 0.316 r_nbd_refined 0.208 r_symmetry_vdw_refined 0.185 r_xyhbond_nbd_refined 0.138 r_symmetry_hbond_refined 0.098 r_chiral_restr 0.085 r_bond_refined_d 0.008 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2338 Nucleic Acid Atoms Solvent Atoms 237 Heterogen Atoms 28
Software Software Software Name Purpose d*TREK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction d*TREK data reduction