☰ Navigation Tabs
Crystal structure of variant R18L of conjugated bile acid hydrolase from Clostridium perfringens
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BJF 2bjfA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 291 100 mM Tris pH 8.5, 200 mM lithium sulfate, 25% PEG 3350, vapor diffusion, hanging drop, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.37 48.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.244 α = 90 b = 64.244 β = 90 c = 170.023 γ = 90
Symmetry Space Group P 42 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE Mar 345 mirrors 2005-06-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.9184 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.77 50 98.9 0.052 14.4 11.3 35363
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.77 1.83 89.2 0.243 8.3 9 3128
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2bjfA 1.8 40 34005 1703 99.99 0.178 0.176 0.1761 0.213 0.2093 RANDOM 21.854
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.41 0.41 -0.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.119 r_dihedral_angle_3_deg 12.58 r_dihedral_angle_4_deg 8.484 r_dihedral_angle_1_deg 5.908 r_scangle_it 2.747 r_scbond_it 1.805 r_mcangle_it 1.339 r_angle_refined_deg 1.207 r_mcbond_it 0.834 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.119 r_dihedral_angle_3_deg 12.58 r_dihedral_angle_4_deg 8.484 r_dihedral_angle_1_deg 5.908 r_scangle_it 2.747 r_scbond_it 1.805 r_mcangle_it 1.339 r_angle_refined_deg 1.207 r_mcbond_it 0.834 r_nbtor_refined 0.305 r_symmetry_vdw_refined 0.233 r_nbd_refined 0.203 r_symmetry_hbond_refined 0.189 r_xyhbond_nbd_refined 0.158 r_chiral_restr 0.091 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2606 Nucleic Acid Atoms Solvent Atoms 393 Heterogen Atoms 37
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction MOLREP phasing