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X-ray structure of SU11274 bound to c-Met
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1R1W pdb entry 1R1W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.8 298 0.1M HEPES pH 7.8, 15% PEG 4K, 6% 2-propanol, 40mM BME, 3% Ethanol, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.04 39.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.104 α = 90 b = 43.441 β = 90 c = 158.072 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 130 IMAGE PLATE RIGAKU RAXIS IV++ osmic 2007-09-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 94.9 0.049 23.6 14704 13955 -1 -1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.28 91.1 0.234 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1R1W 2.2 25.28 14704 13955 733 95.23 0.22594 0.22594 0.22411 0.218 0.26152 0.2558 RANDOM 36.256
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 1.38 -1.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.679 r_dihedral_angle_3_deg 14.528 r_dihedral_angle_4_deg 9.57 r_dihedral_angle_1_deg 5.19 r_scangle_it 1.536 r_angle_refined_deg 1.117 r_scbond_it 1.054 r_mcangle_it 1.029 r_mcbond_it 0.587 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.679 r_dihedral_angle_3_deg 14.528 r_dihedral_angle_4_deg 9.57 r_dihedral_angle_1_deg 5.19 r_scangle_it 1.536 r_angle_refined_deg 1.117 r_scbond_it 1.054 r_mcangle_it 1.029 r_mcbond_it 0.587 r_nbtor_refined 0.301 r_nbd_refined 0.183 r_xyhbond_nbd_refined 0.148 r_symmetry_vdw_refined 0.134 r_symmetry_hbond_refined 0.086 r_chiral_restr 0.073 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2086 Nucleic Acid Atoms Solvent Atoms 135 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement CrystalClear data collection DENZO data reduction SCALEPACK data scaling AMoRE phasing