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Crystal structure of Plasmodium falciparum pyrroline carboxylate reductase (MAL13P1.284) with NADP bound
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 30% PEG MME550, 50 mM MgCl2, 0.1 M Hepes pH 7.5, 5 mM NADP, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.52 51.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 160.207 α = 90 b = 113.741 β = 105.71 c = 82.651 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-06-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97937 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 46.27 89.7 0.142 0.108 7.3 2.1 57815 57815
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 53.6 0.496 0.721 1.1 2.3 3416
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.3 46.27 56209 56209 2849 88.86 0.247 0.245 0.289 0.2663 RANDOM 39.213
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.05 0.06 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.727 r_dihedral_angle_4_deg 17.407 r_dihedral_angle_3_deg 14.542 r_dihedral_angle_1_deg 3.88 r_angle_refined_deg 0.941 r_scangle_it 0.462 r_mcangle_it 0.403 r_scbond_it 0.29 r_nbtor_refined 0.285 r_mcbond_it 0.226
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.727 r_dihedral_angle_4_deg 17.407 r_dihedral_angle_3_deg 14.542 r_dihedral_angle_1_deg 3.88 r_angle_refined_deg 0.941 r_scangle_it 0.462 r_mcangle_it 0.403 r_scbond_it 0.29 r_nbtor_refined 0.285 r_mcbond_it 0.226 r_nbd_refined 0.166 r_symmetry_vdw_refined 0.147 r_xyhbond_nbd_refined 0.09 r_symmetry_hbond_refined 0.09 r_chiral_restr 0.054 r_bond_refined_d 0.006 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9396 Nucleic Acid Atoms Solvent Atoms 427 Heterogen Atoms 256
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELX phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection SHELXD phasing