2RCJ
Solution structure of human Immunoglobulin M
SOLUTION SCATTERING
Solution Scattering Data Acquistion | 1 |
---|---|
Scattering Type | x-ray |
Radiation/Neutron Source | SRS DARESBURY |
Synchrotron | Y |
Beamline Type | 7.3 |
Detector Type | LINEAR DETECTOR |
Detector Manufacturer Details | |
Temperature (K) | 293 |
pH | 7 |
Numer of Time Frames Used | 1 |
Protein Concentration Range (mg/mL) | 2-30 |
Sample Buffer | 200 MM NACL 12 MM NAHPO4 0.05% NA AZIDE |
Data Reduction Software | SWANAL |
Guiner Mean Radius Of Gyration (nm) | 12.17 |
Sigma Mean Radius Of Gyration | 0.34 |
R(XS-1) Mean Cross Sectional Radii (nm) | 6.06 |
R(XS-1) Sigma Mean Cross Sectional Radii | 0.19 |
R(XS-2) Mean Cross Sectional Radii (nm) | 1.79 |
R(XS-2) Sigma Mean Cross Sectional Radii | 0.12 |
P(R) Protein Length (nm) |
Solution Scattering Data Analysis and Model Fitting | |||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Method | Software | Software Authors | Starting Model | Conformers, Number Calculated | Conformers, Number Submitted | Conformers, Selection Criteria | Best Representative Conformer | Other Details | |||||||||||
FRODO, INSIGHT, SCTPL2 | 1 | THE DEPOSITED STRUCTURE CONTAINS ONLY CA ATOMS. THE IGM COORDINATES ARE PROVIDED FROM AN EARLY STUDY IN WHICH A MANUAL FIT METHOD BAS ... | THE DEPOSITED STRUCTURE CONTAINS
ONLY CA ATOMS. THE IGM COORDINATES ARE PROVIDED FROM AN EARLY
STUDY IN WHICH A MANUAL FIT METHOD BASED ON KNOWN CRYSTAL
STRUCTURES FOR IGG WAS USED TO DETERMINE STRUCTURES FOR INTACT
IGM AND ITS FAB, FAB'2, FC5 AND IGM-S MONOMER SUBUNITS. THESE
CRYSTAL STRUCTURES ORIGINATED FROM HUMAN FAB KOL (PDB CODE
2FB4) AND HUMAN FC (PDB CODE 1FC1). THIS PROCEDURE IS
APPROXIMATE AND THE IGM MODEL IS NOT CONSIDERED TO BE OPTIMAL
OR REFINED AGAINST THE X-RAY SCATTERING DATA. |
Diffraction
Radiation Source | |||||
---|---|---|---|---|---|
ID # | Source | Type | Wavelength List | Synchrotron Site | Beamline |
1 | OTHER | 1.54 | |||
2 | OTHER | 1.54 |