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Crystal structure of CBS domain, NE2398
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.2 297 0.1M Na(OAC) pH 5.2, 25% PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.09 41.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.195 α = 90 b = 95.641 β = 90 c = 99.759 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2007-06-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 0.91970 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 99.6 0.137 0.137 7.8 11.6 67993 67993 15.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.66 96.8 0.682 0.682 1.57 3.2 6501
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.6 50 66839 66839 676 98.75 0.18807 0.18807 0.18759 0.1871 0.23595 0.23 RANDOM 17.641
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.36 0.34 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.207 r_dihedral_angle_4_deg 18.004 r_dihedral_angle_3_deg 13.625 r_dihedral_angle_1_deg 5.576 r_scangle_it 3.078 r_scbond_it 1.938 r_angle_refined_deg 1.422 r_mcangle_it 1.342 r_mcbond_it 0.891 r_nbtor_refined 0.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.207 r_dihedral_angle_4_deg 18.004 r_dihedral_angle_3_deg 13.625 r_dihedral_angle_1_deg 5.576 r_scangle_it 3.078 r_scbond_it 1.938 r_angle_refined_deg 1.422 r_mcangle_it 1.342 r_mcbond_it 0.891 r_nbtor_refined 0.295 r_symmetry_vdw_refined 0.205 r_nbd_refined 0.194 r_xyhbond_nbd_refined 0.155 r_symmetry_hbond_refined 0.13 r_chiral_restr 0.082 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3934 Nucleic Acid Atoms Solvent Atoms 710 Heterogen Atoms 215
Software Software Software Name Purpose REFMAC refinement MAR345 data collection HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing